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Ok my friend got a new ps3 from sony and he jailbroke it on 3.41 and loaded his patch and stuff and well he updated to play online and when he got done updating he still had FTP and Backup manager but when he went to use them he got an error so i guess that means he pretty mutch lost his Jailbreak
I think what he meant is that whatever you installed on your Ps3 that was jailbroken will still be on the ps3, after you update, however it will not work.